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Bioinformatics Data Skills: Reproducible and Robust Research with Open Source Tools

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This practical book teaches the skills that scientists need for turning large sequencing datasets into reproducible and robust biological findings. Many biologists begin their bioinformatics training by learning scripting languages like Python and R alongside the Unix command line. But there's a huge gap between knowing a few programming languages and being prepared to analyze large amounts of biological data.
Rather than teach bioinformatics as a set of workflows that are likely to change with this rapidly evolving field, this book demsonstrates the practice of bioinformatics through data skills. Rigorous assessment of data quality and of the effectiveness of tools is the foundation of reproducible and robust bioinformatics analysis. Through open source and freely available tools, you'll learn not only how to do bioinformatics, but how to approach problems as a bioinformatician.
  • Go from handling small problems with messy scripts to tackling large problems with clever methods and tools
  • Focus on high-throughput (or "next generation") sequencing data
  • Learn data analysis with modern methods, versus covering older theoretical concepts
  • Understand how to choose and implement the best tool for the job
  • Delve into methods that lead to easier, more reproducible, and robust bioinformatics analysis
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Designing Machine Learning Systems with Python
Designing Machine Learning Systems with Python

Design efficient machine learning systems that give you more accurate results

About This Book

  • Gain an understanding of the machine learning design process
  • Optimize machine learning systems for improved accuracy
  • Understand common programming tools and techniques for machine...
Pro Vagrant
Pro Vagrant

Pro Vagrant teaches you how to effectively implement and optimize Vagrant in your everyday work environment. Master the creation and configuration of virtual development environments with an easy-to-use workflow, and focus on automation. Vagrant lowers development environment setup time, increases development/production parity, and...

Making Sense of Data: Designing Effective Visualizations
Making Sense of Data: Designing Effective Visualizations

You have a mound of data sitting in front of you and a suite of computation tools at your disposal. And yet, you’re stumped as to how to turn that data into insight. Which part of that data actually matters, and where is this insight hidden?

If you’re a data scientist who struggles to navigate the murky space...


Pro SQL Server Wait Statistics
Pro SQL Server Wait Statistics

Pro SQL Server Wait Statistics is a practical guide for analyzing and troubleshooting SQL Server performance using wait statistics. Whether you are new to wait statistics, or already familiar with them, this book will help you gain a deeper understanding on how wait statistics are generated and what they can mean for your SQL...

Expert Python Programming - Second Edition
Expert Python Programming - Second Edition

Become an ace Python programmer by learning best coding practices and advance-level concepts with Python 3.5

About This Book

  • Based on the latest stable version of Python (version 3.5)
  • Creating well manageable code that will run in various environments with different sets of...
Introducing Data Science: Big Data, Machine Learning, and more, using Python tools
Introducing Data Science: Big Data, Machine Learning, and more, using Python tools

Summary

Introducing Data Science teaches you how to accomplish the fundamental tasks that occupy data scientists. Using the Python language and common Python libraries, you'll experience firsthand the challenges of dealing with data at scale and gain a solid foundation in data science.

...

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